Morphological characterization of accessions of Phaseolus vulgaris L. in the GeneBank of INIFAT
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Abstract
The common bean collection (Phaseolus vulgaris L.) from the Genebank of Institute for Fundamental Research in Tropical Agriculture “Alejandro de Humboldt” (INIFAT), has the potential to be used as genetic material in breeding programs for the crop, in the development of strategies for the conservation of local varieties, for confronting climate change, among other functions. The optimal exploitation of the genetic potential of this collection is only achieved through characterization. The following work aims to characterize the genetic variability of a sample of 35 accessions of common bean (Phaseolus vulgaris L.) through the use of 31 morphological descriptors. The selected sample presented less variability in terms of maturity and harvest times, also presented a significant correlation between the traits related to the architecture of the plant. Principal component analysis indicated that first two components explained 63.8 % of total variance. The type and size of grains have an important role in the grouping of the accessions. Several genotypes evaluated have potential as basic breeding lines.
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References
Loko L., Orobiyi A, Adjatin A, Akpo J, Toffa J, Djedatin G, et al. Morphological characterization of common bean (Phaseolus vulgaris L .) landraces of Central region of Benin Republic. J. Plant Breed. Crop Sci. 2018; 10: 304–318. doi: 10.5897/JPBCS2018.0766.
Sinkovic, L., Pipan, B., Sinkovic, E. & Meglic, V. Morphological seed characterization of common (Phaseolus vulgaris L.) and runner (Phaseolus coccineus L .) bean germplasm : A Slovenian Gene Bank Example. Hindawi, BioMed Res. Int. 2019; 13 p. doi: 10.1155/2019/6376948.
Nadeem M.A., Yeken M.Z., Shahid M.Q., Habyarimana E., Yılmaz H., Alsaleh A., et al. Common bean as a potential crop for future food security: an overview of past, current and future contributions in genomics, transcriptomics, transgenics and proteomics. Biotechnol. Biotechnol. Equip. 2021; 35: 758–786. doi: 10.1080/13102818.2021.1920462.
Nogueira A.F., Moda-Cirino V., Delfini J., Brandão L.A., Mian S., Constantino L.V., et al. Molecular analysis of genetic diversity in the Mesoamerican common bean panel. PLoS One. 2021; 16: e0249858. doi: 10.1371/journal.pone.0249858.
Murube E., Beleggia R., Pacetti D., Nartea A., Frascarelli G., Lanzavecchia G., et al. Characterization of nutritional quality traits of a common bean germplasm collection. Foods. 2021; 10, 1572. doi: 10.3390/ foods10071572.
Long J., Zhang J., Zhang X., Wu J., Chen H., Wang P., et al. Genetic Diversity of Common Bean (Phaseolus vulgaris L .) germplasm resources in Chongqing , evidenced by morphological characterization. Front. Genet. 2021; 11: 697. doi: 10.3389/fgene.2020.00697.
Cortinovis G., Oppermann M., Neumann K., Graner A., Gioia T., Marsella M., et al. Towards the development, maintenance, and standardized phenotypic characterization of single-seed-descent genetic resources for common bean. Curr. Protoc. 2021; 1: 1–28. doi: 10.1002/cpz1.133.
Nkhata W., Shimelis H., Melis R., Chirwa R., Mzengeza T., Mathew I. Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers. PLoS One. 2020; 15: e0243238. doi: 10.1371/journal.pone.0243238.
ONEI, Oficina Nacional de Estadística e Información. Anuario Estadístico de Cuba: Agricultura, ganadería, silvicultura y pesca. Oficina Nacional de Estadística e Información [Internet]. 2020, [Cited in 2022 January 12], Available from ˂http://onei.gob.cu/node/16275˃.
Lamz A., Cárdenas, R. M., Ortiz, R., Alfonzo, L. E., Sandrino, A. Evaluación preliminar de líneas de frijol común (Phaselus vulgaris L.) promisorios para siembras tempranas en Melena del Sur. Cultiv. Trop. 2017; 338, 111–118. Available from: http://repositorio.geotech.cu/jspui/handle/1234/3387.
Mascher M., Schreiber M., Scholz U., Graner A., Reif J.C., Stein N. Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nat. Genet. 2019; 51: 1076–1081. doi: 10.1038/s41588-019-0443-6.
Hamouda M., Haider, A. S., Elbehairy, E., Elshanshory, A. R. Genetic variation among common bean cultivars ( Phaseolus vulgaris L .) as revealed by morphological , protein and molecular markers. Egypt. J. Exp. Biol. 2020; 16 (2): 129–139. doi:10.5455/egyjebb.20200721080720.
Nadeem M.A., Karaköy T., Yeken M.Z., Habyarimana E., Hatipo Q., Çiftçi V, et al. Phenotypic characterization of 183 turkish common bean accessions for agronomic, trading, and consumer-preferred plant characteristics for breeding purposes. Agronomy. 2020; 10: 2–20. doi: 10.3390/agronomy10020272.
Muñoz G., Giraldo G, Fernández de Soto J. Descriptores varietales: arroz, fríjol, maíz, sorgo.Cali, Colombia: CIAT (Centro Internacional de Agricultura Tropical). 1993: 169 p. (Publicacion CIAT No 177). Available from: https://hdl.handle.net/10568/54651.
Stoilova T., Pereira G., Sousa M.T.D. Morphological characterization of a small common bean (Phaseolus vulgaris L .) collection under different environments. J. Cent. Eur. Agric. 2013; 14: 854–864. doi: 10.5513/JCEA01/14.3.1277.
Bode D., Elezi F., Gixhari B. Morphological characterization and interrelationships among descriptors in Phaseolus vulgaris L. accesions Agric. For. 2013; 59: 175–185. doi: 10.5897/JPBCS2018.0766.
Vidak M., Malešević S., Gridiša M., Šatović Z., Lazarević B., Carović-Stanko K. Phenotypic diversity among croatian common bean (Phaseolus vulgaris L.) landraces. Agric. Conspec. Sci. 2015; 80 (3): 133–137. https://hrcak.srce.hr/154806.
Guidoti D.T., Gonela A., Gonçalves-Vidigal M.C., Conrado T.V., Romani I. Interrelationship between morphological, agronomic and molecular characteristics in the analysis of common bean genetic diversity. Genet. Plant Breed. 2019; 40: 1–9. doi: 10.4025/actasciagron.v40i1.33032.
Chiorato A.F., Carbonell S.A.M., Dias L.A.D.S., Moura R.R., Chiavegato M.B., Colombo C.A . Identification of common bean (Phaseolus vulgaris) duplicates using agromorphological and molecular data. Genet. Mol. Biol. 2006; 29: 105–111. doi: 10.1590/S1415-47572006000100020.
Raatz B., Mukankusi C., Lobaton J.D. Analyses of African common bean (Phaseolus vulgaris L.) germplasm using a SNP fingerprinting platform: diversity, quality control and molecular breeding. Genet Resour Crop Evol. 2019; 66: 707–722. doi: 10.1007/s10722-019-00746-0.
Vidak M., Šatović Z., Liber Z., Grdiša M., Gunjača J., Kilian A. et al. Assessment of the origin and diversity of croatian common bean germplasm using phaseolin type, SSR and SNP markers and morphological Traits. Plants. 2021; 10 (4): 605. doi: 10.3390/plants10040665.